Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.23■□□□□ 0.19
CLHC1Q8NHS4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLHC1Q8NHS4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CLHC1Q8NHS4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC064862.7-201ENST00000604520 867 ntBASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC010331.1-201ENST00000611423 582 ntBASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC243591.1-201ENST00000452967 1364 ntBASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 CICP6-201ENST00000457191 2729 ntBASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLHC1Q8NHS4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 AC005052.1-201ENST00000625181 2492 ntBASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 AP002490.2-201ENST00000524791 560 ntBASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
CLHC1Q8NHS4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.21■□□□□ 0.18
CLHC1Q8NHS4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms