Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 AL158211.3-201ENST00000607385 239 ntBASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 SPDYE12P-201ENST00000618416 771 ntBASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHROOM1Q2M3G4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 AL645728.1-201ENST00000366221 2101 ntBASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.5■□□□□ 0.71
SHROOM1Q2M3G4 AC073439.1-201ENST00000624121 1774 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AC015922.1-201ENST00000421102 1152 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 TSSK5P-201ENST00000423978 907 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AC004890.2-204ENST00000481968 304 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AC105233.2-201ENST00000523697 349 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AF228730.5-201ENST00000530288 346 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SHROOM1Q2M3G4 AL645608.8-201ENST00000606034 2086 ntBASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 TMPRSS11CP-201ENST00000453277 683 ntBASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.48■□□□□ 0.71
SHROOM1Q2M3G4 KRT18P34-201ENST00000488218 1270 ntBASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms