Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 APOC3-202ENST00000375345 604 ntTSL 5 BASIC23.02■■□□□ 1.28
MSH6P52701 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
MSH6P52701 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC23.02■■□□□ 1.28
MSH6P52701 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
MSH6P52701 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC23.02■■□□□ 1.28
MSH6P52701 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH6P52701 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH6P52701 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH6P52701 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
MSH6P52701 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC23.02■■□□□ 1.28
MSH6P52701 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
MSH6P52701 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH6P52701 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC23.01■■□□□ 1.27
MSH6P52701 SDHAP3-202ENST00000515467 728 ntBASIC23.01■■□□□ 1.27
MSH6P52701 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC23.01■■□□□ 1.27
MSH6P52701 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH6P52701 RRP7BP-205ENST00000566851 833 ntBASIC23.01■■□□□ 1.27
MSH6P52701 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH6P52701 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC23.01■■□□□ 1.27
MSH6P52701 AL033527.5-202ENST00000641632 1098 ntBASIC23.01■■□□□ 1.27
MSH6P52701 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH6P52701 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC23.01■■□□□ 1.27
MSH6P52701 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC23.01■■□□□ 1.27
MSH6P52701 KRT8P49-201ENST00000604166 1432 ntBASIC23.01■■□□□ 1.27
MSH6P52701 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 AC092506.1-202ENST00000401022 528 ntBASIC23.01■■□□□ 1.27
MSH6P52701 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC23.01■■□□□ 1.27
MSH6P52701 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC23.01■■□□□ 1.27
MSH6P52701 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC23.01■■□□□ 1.27
MSH6P52701 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC23.01■■□□□ 1.27
MSH6P52701 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC23.01■■□□□ 1.27
MSH6P52701 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC23.01■■□□□ 1.27
MSH6P52701 AL033527.5-201ENST00000641382 801 ntBASIC23.01■■□□□ 1.27
MSH6P52701 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
MSH6P52701 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC23■■□□□ 1.27
MSH6P52701 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
MSH6P52701 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC23■■□□□ 1.27
MSH6P52701 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
MSH6P52701 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC23■■□□□ 1.27
MSH6P52701 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
MSH6P52701 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC23■■□□□ 1.27
MSH6P52701 BTNL10-201ENST00000595971 695 ntBASIC23■■□□□ 1.27
MSH6P52701 AC010319.3-201ENST00000597028 470 ntBASIC23■■□□□ 1.27
MSH6P52701 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC23■■□□□ 1.27
MSH6P52701 AL354751.1-201ENST00000412768 1863 ntBASIC23■■□□□ 1.27
MSH6P52701 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
MSH6P52701 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.99■■□□□ 1.27
MSH6P52701 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC22.99■■□□□ 1.27
MSH6P52701 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
MSH6P52701 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms