Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.43■□□□□ 0.54
CLCN3P51790 AC021097.1-201ENST00000607902 574 ntBASIC18.43■□□□□ 0.54
CLCN3P51790 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.43■□□□□ 0.54
CLCN3P51790 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.43■□□□□ 0.54
CLCN3P51790 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.43■□□□□ 0.54
CLCN3P51790 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.43■□□□□ 0.54
CLCN3P51790 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.43■□□□□ 0.54
CLCN3P51790 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.43■□□□□ 0.54
CLCN3P51790 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CLCN3P51790 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLCN3P51790 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
CLCN3P51790 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CLCN3P51790 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
CLCN3P51790 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.42■□□□□ 0.54
CLCN3P51790 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CLCN3P51790 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CLCN3P51790 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.42■□□□□ 0.54
CLCN3P51790 FAM86GP-201ENST00000448322 971 ntBASIC18.42■□□□□ 0.54
CLCN3P51790 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.42■□□□□ 0.54
CLCN3P51790 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 AC013467.2-201ENST00000605472 835 ntBASIC18.42■□□□□ 0.54
CLCN3P51790 AC008267.7-201ENST00000624570 1194 ntBASIC18.42■□□□□ 0.54
CLCN3P51790 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
CLCN3P51790 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.42■□□□□ 0.54
CLCN3P51790 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CLCN3P51790 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CLCN3P51790 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.42■□□□□ 0.54
CLCN3P51790 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CLCN3P51790 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.42■□□□□ 0.54
CLCN3P51790 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CLCN3P51790 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CLCN3P51790 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.41■□□□□ 0.54
CLCN3P51790 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CLCN3P51790 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 SNX33P1-201ENST00000592116 1762 ntBASIC18.41■□□□□ 0.54
CLCN3P51790 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CLCN3P51790 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 MIR770-201ENST00000390219 98 ntBASIC18.41■□□□□ 0.54
CLCN3P51790 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 AP000842.3-202ENST00000569238 1080 ntBASIC18.41■□□□□ 0.54
CLCN3P51790 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.41■□□□□ 0.54
CLCN3P51790 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.41■□□□□ 0.54
CLCN3P51790 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.41■□□□□ 0.54
CLCN3P51790 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.41■□□□□ 0.54
CLCN3P51790 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLCN3P51790 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.41■□□□□ 0.54
CLCN3P51790 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLCN3P51790 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLCN3P51790 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLCN3P51790 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms