Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 AC067930.6-201ENST00000623257 4947 ntBASIC14.05□□□□□ -0.16
HOXA1P49639 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.05□□□□□ -0.16
HOXA1P49639 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXA1P49639 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXA1P49639 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 ZNF444P1-201ENST00000559497 298 ntBASIC14.05□□□□□ -0.16
HOXA1P49639 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.05□□□□□ -0.16
HOXA1P49639 AC079602.3-201ENST00000623931 403 ntBASIC14.05□□□□□ -0.16
HOXA1P49639 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXA1P49639 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
HOXA1P49639 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.05□□□□□ -0.16
HOXA1P49639 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
HOXA1P49639 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
HOXA1P49639 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.04□□□□□ -0.16
HOXA1P49639 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
HOXA1P49639 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
HOXA1P49639 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
HOXA1P49639 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
HOXA1P49639 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 AP003733.1-201ENST00000491725 852 ntBASIC14.04□□□□□ -0.16
HOXA1P49639 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 AL031432.5-201ENST00000641059 760 ntBASIC14.04□□□□□ -0.16
HOXA1P49639 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.04□□□□□ -0.16
HOXA1P49639 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 AL359258.3-201ENST00000622910 2331 ntBASIC14.04□□□□□ -0.16
HOXA1P49639 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HOXA1P49639 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HOXA1P49639 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms