Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 DUX4L17-201ENST00000557360 1267 ntBASIC16.78■□□□□ 0.28
MSH3P20585 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 AC106886.4-201ENST00000623557 2502 ntBASIC16.78■□□□□ 0.28
MSH3P20585 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
MSH3P20585 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.78■□□□□ 0.28
MSH3P20585 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSH3P20585 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH3P20585 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
MSH3P20585 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.77■□□□□ 0.28
MSH3P20585 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH3P20585 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.77■□□□□ 0.28
MSH3P20585 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.77■□□□□ 0.28
MSH3P20585 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 OR7E47P-204ENST00000575924 449 ntBASIC16.77■□□□□ 0.28
MSH3P20585 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.77■□□□□ 0.28
MSH3P20585 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.77■□□□□ 0.28
MSH3P20585 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.77■□□□□ 0.28
MSH3P20585 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSH3P20585 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.77■□□□□ 0.28
MSH3P20585 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
MSH3P20585 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH3P20585 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH3P20585 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH3P20585 AL139384.1-201ENST00000612143 3047 ntBASIC16.77■□□□□ 0.27
MSH3P20585 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSH3P20585 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MSH3P20585 TOP3BP1-201ENST00000420768 1380 ntBASIC16.77■□□□□ 0.27
MSH3P20585 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.77■□□□□ 0.27
MSH3P20585 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.76■□□□□ 0.27
MSH3P20585 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.76■□□□□ 0.27
MSH3P20585 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 AC007967.2-201ENST00000432613 625 ntBASIC16.76■□□□□ 0.27
MSH3P20585 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.76■□□□□ 0.27
MSH3P20585 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 AC027601.4-201ENST00000611259 610 ntBASIC16.76■□□□□ 0.27
MSH3P20585 REXO1L3P-201ENST00000622202 1288 ntBASIC16.76■□□□□ 0.27
MSH3P20585 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
MSH3P20585 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.76■□□□□ 0.27
MSH3P20585 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.76■□□□□ 0.27
MSH3P20585 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSH3P20585 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms