Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.17■□□□□ 0.34
VCANP13611 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 AL589987.1-201ENST00000453380 819 ntBASIC17.17■□□□□ 0.34
VCANP13611 BX284668.4-201ENST00000453917 508 ntBASIC17.17■□□□□ 0.34
VCANP13611 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.17■□□□□ 0.34
VCANP13611 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VCANP13611 AC073389.1-201ENST00000595595 795 ntBASIC17.17■□□□□ 0.34
VCANP13611 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
VCANP13611 AC105021.1-202ENST00000570572 669 ntBASIC17.17■□□□□ 0.34
VCANP13611 HLA-C-210ENST00000640219 976 ntBASIC17.17■□□□□ 0.34
VCANP13611 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.16■□□□□ 0.34
VCANP13611 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 RNU1-129P-201ENST00000384064 167 ntBASIC17.16■□□□□ 0.34
VCANP13611 MEP1AP4-201ENST00000423244 1087 ntBASIC17.16■□□□□ 0.34
VCANP13611 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.16■□□□□ 0.34
VCANP13611 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.16■□□□□ 0.34
VCANP13611 U1.21-201ENST00000580816 167 ntBASIC17.16■□□□□ 0.34
VCANP13611 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 AL031055.1-201ENST00000606362 631 ntBASIC17.16■□□□□ 0.34
VCANP13611 AC005695.3-201ENST00000614522 232 ntBASIC17.16■□□□□ 0.34
VCANP13611 AL008638.5-201ENST00000623814 1298 ntBASIC17.16■□□□□ 0.34
VCANP13611 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.16■□□□□ 0.34
VCANP13611 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VCANP13611 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VCANP13611 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
VCANP13611 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VCANP13611 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VCANP13611 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VCANP13611 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.16■□□□□ 0.34
VCANP13611 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.16■□□□□ 0.34
VCANP13611 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.15■□□□□ 0.34
VCANP13611 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.15■□□□□ 0.34
VCANP13611 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VCANP13611 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VCANP13611 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VCANP13611 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VCANP13611 AC091804.1-201ENST00000486888 567 ntBASIC17.15■□□□□ 0.34
VCANP13611 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.15■□□□□ 0.34
VCANP13611 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.15■□□□□ 0.34
VCANP13611 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
VCANP13611 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.15■□□□□ 0.34
VCANP13611 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.15■□□□□ 0.34
VCANP13611 RN7SL618P-201ENST00000477850 296 ntBASIC17.15■□□□□ 0.34
VCANP13611 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VCANP13611 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.15■□□□□ 0.34
VCANP13611 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
VCANP13611 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
VCANP13611 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms