Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC13.11□□□□□ -0.31
CXCL1P09341 FDX2-206ENST00000492239 773 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 AP003041.3-201ENST00000527151 707 ntBASIC13.11□□□□□ -0.31
CXCL1P09341 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 AC007686.3-201ENST00000619017 3487 ntBASIC13.11□□□□□ -0.31
CXCL1P09341 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
CXCL1P09341 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CXCL1P09341 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.11□□□□□ -0.31
CXCL1P09341 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 KRT18P29-201ENST00000397031 1267 ntBASIC13.1□□□□□ -0.31
CXCL1P09341 HLA-L-209ENST00000420110 1011 ntBASIC13.1□□□□□ -0.31
CXCL1P09341 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC13.1□□□□□ -0.31
CXCL1P09341 AL355355.2-201ENST00000442321 338 ntBASIC13.1□□□□□ -0.31
CXCL1P09341 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC13.1□□□□□ -0.31
CXCL1P09341 AC113404.2-201ENST00000507884 177 ntBASIC13.1□□□□□ -0.31
CXCL1P09341 TK2-204ENST00000525974 1178 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC13.1□□□□□ -0.31
CXCL1P09341 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.1□□□□□ -0.31
CXCL1P09341 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC13.1□□□□□ -0.31
CXCL1P09341 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CXCL1P09341 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.1□□□□□ -0.31
CXCL1P09341 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.1□□□□□ -0.31
CXCL1P09341 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC13.09□□□□□ -0.31
CXCL1P09341 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CXCL1P09341 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.09□□□□□ -0.31
CXCL1P09341 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CXCL1P09341 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms