Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.99■□□□□ 0.31
VIMP08670 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.99■□□□□ 0.31
VIMP08670 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
VIMP08670 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VIMP08670 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
VIMP08670 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VIMP08670 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
VIMP08670 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.98■□□□□ 0.31
VIMP08670 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.98■□□□□ 0.31
VIMP08670 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.98■□□□□ 0.31
VIMP08670 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.98■□□□□ 0.31
VIMP08670 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.98■□□□□ 0.31
VIMP08670 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VIMP08670 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
VIMP08670 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 GPR89P-201ENST00000407924 1495 ntBASIC16.98■□□□□ 0.31
VIMP08670 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VIMP08670 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 TUBB8P12-201ENST00000308911 1335 ntBASIC16.97■□□□□ 0.31
VIMP08670 TUBB7P-202ENST00000428444 1305 ntBASIC16.97■□□□□ 0.31
VIMP08670 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 TUBB8P7-204ENST00000567960 1332 ntBASIC16.97■□□□□ 0.31
VIMP08670 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 AL603832.2-201ENST00000566195 2125 ntBASIC16.97■□□□□ 0.31
VIMP08670 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VIMP08670 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.97■□□□□ 0.31
VIMP08670 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VIMP08670 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VIMP08670 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.97■□□□□ 0.31
VIMP08670 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VIMP08670 MIR718-201ENST00000390190 70 ntBASIC16.97■□□□□ 0.31
VIMP08670 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 AC142381.4-202ENST00000563973 229 ntBASIC16.97■□□□□ 0.31
VIMP08670 AC010653.2-201ENST00000623505 997 ntBASIC16.97■□□□□ 0.31
VIMP08670 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VIMP08670 AC010460.3-201ENST00000511359 1579 ntBASIC16.97■□□□□ 0.31
VIMP08670 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
VIMP08670 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.97■□□□□ 0.31
VIMP08670 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VIMP08670 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.97■□□□□ 0.31
VIMP08670 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.97■□□□□ 0.31
VIMP08670 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VIMP08670 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VIMP08670 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
VIMP08670 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
VIMP08670 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms