Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.56■□□□□ 0.24
VPS4BO75351 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS4BO75351 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 LINC02084-201ENST00000606069 1096 ntBASIC16.56■□□□□ 0.24
VPS4BO75351 AC026691.1-201ENST00000602502 2017 ntBASIC16.56■□□□□ 0.24
VPS4BO75351 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VPS4BO75351 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VPS4BO75351 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4BO75351 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4BO75351 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
VPS4BO75351 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VPS4BO75351 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 AC018712.1-201ENST00000455767 687 ntBASIC16.55■□□□□ 0.24
VPS4BO75351 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS4BO75351 AC091607.1-201ENST00000490318 1060 ntBASIC16.55■□□□□ 0.24
VPS4BO75351 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS4BO75351 MIR3687-2-201ENST00000577708 61 ntBASIC16.55■□□□□ 0.24
VPS4BO75351 MIR3687-1-201ENST00000614492 61 ntBASIC16.55■□□□□ 0.24
VPS4BO75351 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 AD001527.2-201ENST00000622994 785 ntBASIC16.55■□□□□ 0.24
VPS4BO75351 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS4BO75351 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4BO75351 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4BO75351 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VPS4BO75351 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4BO75351 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 AC132938.5-201ENST00000624980 1813 ntBASIC16.54■□□□□ 0.24
VPS4BO75351 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4BO75351 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4BO75351 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
VPS4BO75351 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4BO75351 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4BO75351 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4BO75351 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS4BO75351 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4BO75351 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS4BO75351 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4BO75351 AC011467.2-201ENST00000598425 242 ntBASIC16.54■□□□□ 0.24
VPS4BO75351 AC140113.2-201ENST00000604370 208 ntBASIC16.54■□□□□ 0.24
VPS4BO75351 AC027601.4-201ENST00000611259 610 ntBASIC16.54■□□□□ 0.24
VPS4BO75351 MIR7706-201ENST00000613747 67 ntBASIC16.54■□□□□ 0.24
VPS4BO75351 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS4BO75351 AC114341.1-201ENST00000618070 349 ntBASIC16.54■□□□□ 0.24
VPS4BO75351 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4BO75351 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms