Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.95■□□□□ 0.94
CACNA1FO60840 AC011676.5-201ENST00000624864 2660 ntBASIC20.95■□□□□ 0.94
CACNA1FO60840 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.95■□□□□ 0.94
CACNA1FO60840 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CACNA1FO60840 AC051619.7-201ENST00000568314 623 ntBASIC20.95■□□□□ 0.94
CACNA1FO60840 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC20.95■□□□□ 0.94
CACNA1FO60840 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.95■□□□□ 0.94
CACNA1FO60840 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.95■□□□□ 0.94
CACNA1FO60840 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.95■□□□□ 0.94
CACNA1FO60840 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CACNA1FO60840 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.95■□□□□ 0.94
CACNA1FO60840 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 RNA5SP410-201ENST00000516285 106 ntBASIC20.94■□□□□ 0.94
CACNA1FO60840 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 SNHG9-202ENST00000564014 471 ntBASIC20.94■□□□□ 0.94
CACNA1FO60840 AC093512.1-201ENST00000617969 520 ntBASIC20.94■□□□□ 0.94
CACNA1FO60840 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 MIR346-201ENST00000362234 95 ntBASIC20.94■□□□□ 0.94
CACNA1FO60840 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 HLA-H-201ENST00000383620 1096 ntBASIC20.94■□□□□ 0.94
CACNA1FO60840 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CACNA1FO60840 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CACNA1FO60840 SPTSSB-204ENST00000617024 1292 ntBASIC20.94■□□□□ 0.94
CACNA1FO60840 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
CACNA1FO60840 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CACNA1FO60840 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.93■□□□□ 0.94
CACNA1FO60840 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
CACNA1FO60840 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CACNA1FO60840 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CACNA1FO60840 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC20.93■□□□□ 0.94
CACNA1FO60840 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CACNA1FO60840 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.93■□□□□ 0.94
CACNA1FO60840 SPDYE7P-202ENST00000420373 878 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 HMGN1P19-201ENST00000436976 333 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 AC092183.1-201ENST00000469884 875 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.93■□□□□ 0.94
CACNA1FO60840 AC140878.1-201ENST00000565277 250 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 MIR6080-201ENST00000617359 66 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 LINC00628-201ENST00000628516 1289 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.93■□□□□ 0.94
CACNA1FO60840 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC20.93■□□□□ 0.94
CACNA1FO60840 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC20.93■□□□□ 0.94
CACNA1FO60840 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.93■□□□□ 0.94
CACNA1FO60840 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC20.93■□□□□ 0.94
CACNA1FO60840 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CACNA1FO60840 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CACNA1FO60840 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.93■□□□□ 0.94
CACNA1FO60840 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.92■□□□□ 0.94
CACNA1FO60840 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.92■□□□□ 0.94
CACNA1FO60840 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.92■□□□□ 0.94
CACNA1FO60840 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.92■□□□□ 0.94
CACNA1FO60840 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CACNA1FO60840 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CACNA1FO60840 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms