Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.82■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC016027.1-202ENST00000607927 1699 ntBASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 UXT-AS1-201ENST00000590504 1525 ntBASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 KRT18P34-201ENST00000488218 1270 ntBASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC006277.1-201ENST00000624348 1610 ntBASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC008267.7-201ENST00000624570 1194 ntBASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms