Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 AC008687.7-202ENST00000637404 953 ntBASIC12.86□□□□□ -0.35
COL6A5A8TX70 HLA-C-210ENST00000640219 976 ntBASIC12.86□□□□□ -0.35
COL6A5A8TX70 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL6A5A8TX70 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL6A5A8TX70 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
COL6A5A8TX70 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 CROCCP3-202ENST00000420820 1947 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 NDUFV2P1-201ENST00000596415 907 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC097724.1-201ENST00000609581 426 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC005695.3-201ENST00000614522 232 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 PRKN-211ENST00000615065 261 ntTSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 CLK3P2-201ENST00000427566 1453 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 MIR3907-201ENST00000579424 151 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AC020914.3-201ENST00000594712 304 ntBASIC12.85□□□□□ -0.35
COL6A5A8TX70 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL6A5A8TX70 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.85□□□□□ -0.35
COL6A5A8TX70 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AC026954.1-201ENST00000429771 1293 ntBASIC12.84□□□□□ -0.35
COL6A5A8TX70 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 PTP4A1P2-201ENST00000546033 454 ntBASIC12.84□□□□□ -0.35
COL6A5A8TX70 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 HLA-DQB1-201ENST00000374943 1656 ntBASIC12.84□□□□□ -0.35
COL6A5A8TX70 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms