Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 MPDU1-223ENST00000582151 728 ntBASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 REXO1L3P-201ENST00000622202 1288 ntBASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 GGT4P-201ENST00000623672 1708 ntBASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIMA1Q9UHB6 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AC138894.3-201ENST00000603787 634 ntBASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AL139288.1-201ENST00000623748 933 ntBASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AL596087.1-201ENST00000400979 1969 ntBASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 AC008894.3-201ENST00000624324 3103 ntBASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMA1Q9UHB6 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 KRT8P39-201ENST00000396270 1433 ntBASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 RBM17P3-201ENST00000417687 1192 ntBASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AL031731.1-201ENST00000642131 2094 ntBASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LIMA1Q9UHB6 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms