Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 RPL13AP23-201ENST00000480739 586 ntBASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 AC034105.1-201ENST00000563488 319 ntBASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 AC145285.3-201ENST00000564603 959 ntBASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 MIR4492-201ENST00000581627 80 ntBASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 AC120114.3-201ENST00000611923 658 ntBASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC4Q9NTJ3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 AL353732.1-201ENST00000569618 1459 ntBASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC4Q9NTJ3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 CRYGEP-201ENST00000412192 528 ntBASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 FAM185BP-201ENST00000443595 716 ntBASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 HCG4B-203ENST00000450128 991 ntBASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 AC005412.3-201ENST00000580309 715 ntBASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 BX640515.1-201ENST00000617215 977 ntBASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SMC4Q9NTJ3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 AC079328.2-201ENST00000561241 3354 ntBASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 AL671710.1-201ENST00000610245 2349 ntBASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 CXCL1P1-201ENST00000502804 216 ntBASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC4Q9NTJ3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms