Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 SPDYE12P-201ENST00000618416 771 ntBASIC18.73■□□□□ 0.59
VTA1Q9NP79 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 AL590560.3-201ENST00000623350 461 ntBASIC18.73■□□□□ 0.59
VTA1Q9NP79 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTA1Q9NP79 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
VTA1Q9NP79 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 FAM220BP-201ENST00000377689 816 ntBASIC18.72■□□□□ 0.59
VTA1Q9NP79 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 TSSK5P-201ENST00000423978 907 ntBASIC18.72■□□□□ 0.59
VTA1Q9NP79 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.72■□□□□ 0.59
VTA1Q9NP79 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VTA1Q9NP79 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 AL035456.1-201ENST00000456064 1369 ntBASIC18.71■□□□□ 0.59
VTA1Q9NP79 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 AC073439.1-201ENST00000624121 1774 ntBASIC18.71■□□□□ 0.59
VTA1Q9NP79 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 MRPS18AP1-201ENST00000414458 589 ntBASIC18.71■□□□□ 0.59
VTA1Q9NP79 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 HLA-V-204ENST00000476601 1289 ntBASIC18.71■□□□□ 0.59
VTA1Q9NP79 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 AL138828.2-201ENST00000615812 383 ntBASIC18.71■□□□□ 0.59
VTA1Q9NP79 SPTSSB-204ENST00000617024 1292 ntBASIC18.71■□□□□ 0.59
VTA1Q9NP79 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.71■□□□□ 0.59
VTA1Q9NP79 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VTA1Q9NP79 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.71■□□□□ 0.58
VTA1Q9NP79 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VTA1Q9NP79 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.7■□□□□ 0.58
VTA1Q9NP79 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VTA1Q9NP79 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms