Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF41Q9H4P4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
RNF41Q9H4P4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 PMS2P4-201ENST00000412466 1052 ntBASIC19.83■□□□□ 0.77
RNF41Q9H4P4 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 AC109635.5-201ENST00000533593 962 ntBASIC19.83■□□□□ 0.77
RNF41Q9H4P4 AP002472.1-201ENST00000577490 586 ntBASIC19.83■□□□□ 0.77
RNF41Q9H4P4 AL031055.1-201ENST00000606362 631 ntBASIC19.83■□□□□ 0.77
RNF41Q9H4P4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.83■□□□□ 0.77
RNF41Q9H4P4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.83■□□□□ 0.76
RNF41Q9H4P4 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNF41Q9H4P4 AC022211.2-201ENST00000585075 2527 ntBASIC19.83■□□□□ 0.76
RNF41Q9H4P4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNF41Q9H4P4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.83■□□□□ 0.76
RNF41Q9H4P4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
RNF41Q9H4P4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNF41Q9H4P4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 AC002056.1-201ENST00000395613 760 ntBASIC19.82■□□□□ 0.76
RNF41Q9H4P4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 AC112191.1-201ENST00000523689 701 ntBASIC19.82■□□□□ 0.76
RNF41Q9H4P4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.82■□□□□ 0.76
RNF41Q9H4P4 C20orf181-201ENST00000623918 480 ntBASIC19.82■□□□□ 0.76
RNF41Q9H4P4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 KRT8P39-201ENST00000396270 1433 ntBASIC19.82■□□□□ 0.76
RNF41Q9H4P4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNF41Q9H4P4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 AC092919.2-201ENST00000623631 1645 ntBASIC19.81■□□□□ 0.76
RNF41Q9H4P4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 HLA-J-202ENST00000469281 1241 ntBASIC19.81■□□□□ 0.76
RNF41Q9H4P4 AC092865.5-201ENST00000545435 363 ntBASIC19.81■□□□□ 0.76
RNF41Q9H4P4 MIR3687-2-201ENST00000577708 61 ntBASIC19.81■□□□□ 0.76
RNF41Q9H4P4 AL009183.1-201ENST00000603760 355 ntBASIC19.81■□□□□ 0.76
RNF41Q9H4P4 MIR3687-1-201ENST00000614492 61 ntBASIC19.81■□□□□ 0.76
RNF41Q9H4P4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNF41Q9H4P4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SNX33P1-201ENST00000592116 1762 ntBASIC19.8■□□□□ 0.76
RNF41Q9H4P4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.8■□□□□ 0.76
RNF41Q9H4P4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms