Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 FAM220CP-201ENST00000395253 831 ntBASIC14.78□□□□□ -0.04
NKX3-1Q99801 FXN-203ENST00000396366 922 ntTSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC122714.2-201ENST00000502787 707 ntBASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 AL136038.3-201ENST00000561909 1096 ntBASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC011840.4-201ENST00000578471 627 ntBASIC14.78□□□□□ -0.04
NKX3-1Q99801 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC011498.5-201ENST00000592027 486 ntBASIC14.78□□□□□ -0.04
NKX3-1Q99801 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC069148.1-201ENST00000608741 768 ntBASIC14.78□□□□□ -0.04
NKX3-1Q99801 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 AL353593.2-201ENST00000602529 1483 ntBASIC14.77□□□□□ -0.04
NKX3-1Q99801 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.77□□□□□ -0.04
NKX3-1Q99801 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
NKX3-1Q99801 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
NKX3-1Q99801 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.77□□□□□ -0.05
NKX3-1Q99801 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
NKX3-1Q99801 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
NKX3-1Q99801 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms