Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 AC016396.2-201ENST00000562575 1417 ntBASIC19.71■□□□□ 0.75
NUP88Q99567 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP88Q99567 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NUP88Q99567 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.71■□□□□ 0.75
NUP88Q99567 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.71■□□□□ 0.75
NUP88Q99567 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.71■□□□□ 0.75
NUP88Q99567 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.71■□□□□ 0.75
NUP88Q99567 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.71■□□□□ 0.75
NUP88Q99567 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.71■□□□□ 0.75
NUP88Q99567 AL645728.2-201ENST00000641974 660 ntBASIC19.71■□□□□ 0.75
NUP88Q99567 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
NUP88Q99567 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NUP88Q99567 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NUP88Q99567 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.71■□□□□ 0.75
NUP88Q99567 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
NUP88Q99567 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.71■□□□□ 0.75
NUP88Q99567 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.71■□□□□ 0.75
NUP88Q99567 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NUP88Q99567 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
NUP88Q99567 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.7■□□□□ 0.74
NUP88Q99567 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.7■□□□□ 0.74
NUP88Q99567 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
NUP88Q99567 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
NUP88Q99567 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
NUP88Q99567 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.7■□□□□ 0.74
NUP88Q99567 TIMM8BP1-201ENST00000452384 211 ntBASIC19.7■□□□□ 0.74
NUP88Q99567 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 DUX4L17-201ENST00000557360 1267 ntBASIC19.7■□□□□ 0.74
NUP88Q99567 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
NUP88Q99567 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.7■□□□□ 0.74
NUP88Q99567 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.7■□□□□ 0.74
NUP88Q99567 AC099398.1-201ENST00000567919 2776 ntBASIC19.7■□□□□ 0.74
NUP88Q99567 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
NUP88Q99567 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.7■□□□□ 0.74
NUP88Q99567 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.7■□□□□ 0.74
NUP88Q99567 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 SLC22A20-204ENST00000530038 1673 ntBASIC19.69■□□□□ 0.74
NUP88Q99567 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 AC002056.1-201ENST00000395613 760 ntBASIC19.69■□□□□ 0.74
NUP88Q99567 AL355306.1-201ENST00000415580 579 ntBASIC19.69■□□□□ 0.74
NUP88Q99567 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 KRT8P48-201ENST00000515599 1220 ntBASIC19.69■□□□□ 0.74
NUP88Q99567 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.69■□□□□ 0.74
NUP88Q99567 RFPL4AP1-201ENST00000530883 850 ntBASIC19.69■□□□□ 0.74
NUP88Q99567 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
NUP88Q99567 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
NUP88Q99567 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 AL121761.2-201ENST00000598007 1648 ntBASIC19.69■□□□□ 0.74
NUP88Q99567 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NUP88Q99567 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
NUP88Q99567 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms