Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 RCN1P1-201ENST00000400413 996 ntBASIC18.24■□□□□ 0.51
CCDC42Q96M95 AL031133.1-201ENST00000406807 723 ntBASIC18.24■□□□□ 0.51
CCDC42Q96M95 SPDYE21P-201ENST00000413323 827 ntBASIC18.24■□□□□ 0.51
CCDC42Q96M95 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 BNIP3P18-201ENST00000593976 575 ntBASIC18.24■□□□□ 0.51
CCDC42Q96M95 AC007950.2-201ENST00000615045 2347 ntBASIC18.24■□□□□ 0.51
CCDC42Q96M95 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 AP002414.1-201ENST00000391405 1147 ntBASIC18.23■□□□□ 0.51
CCDC42Q96M95 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 TSSC2-201ENST00000450217 709 ntBASIC18.23■□□□□ 0.51
CCDC42Q96M95 KRT17P6-201ENST00000453795 1220 ntBASIC18.23■□□□□ 0.51
CCDC42Q96M95 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 AC004817.3-201ENST00000602957 2129 ntBASIC18.23■□□□□ 0.51
CCDC42Q96M95 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.23■□□□□ 0.51
CCDC42Q96M95 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 NSUN5P1-202ENST00000421140 1535 ntBASIC18.23■□□□□ 0.51
CCDC42Q96M95 NSUN5P2-203ENST00000457352 1529 ntBASIC18.23■□□□□ 0.51
CCDC42Q96M95 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC42Q96M95 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 TMPOP1-202ENST00000424642 1267 ntBASIC18.22■□□□□ 0.51
CCDC42Q96M95 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 DRAXINP1-201ENST00000437611 948 ntBASIC18.22■□□□□ 0.51
CCDC42Q96M95 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms