Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DUT-210ENST00000559935 569 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 MTDHP5-201ENST00000598980 586 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AL589182.2-201ENST00000619332 1049 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC004877.2-201ENST00000623941 599 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 STOM-202ENST00000347359 870 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC010654.1-201ENST00000615722 808 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FLYWCH1P1-201ENST00000460917 1874 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC109322.1-201ENST00000524499 1264 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AQP6-205ENST00000618286 829 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 GCK-202ENST00000345378 2421 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ADH5P3-201ENST00000433842 1137 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CCND1-203ENST00000536559 553 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AL513210.1-201ENST00000629608 234 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 REXO1L11P-201ENST00000620964 1927 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SPCS2P1-201ENST00000561636 679 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 MIR4745-201ENST00000577608 62 ntBASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms