Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 KRT18P41-201ENST00000518924 1277 ntBASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 AC004264.1-201ENST00000608354 794 ntBASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 MYO15B-237ENST00000642007 4893 ntBASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28AQ8IWP9 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 AC117489.1-201ENST00000625169 3217 ntBASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC28AQ8IWP9 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CCDC28AQ8IWP9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms