Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC22.59■■□□□ 1.21
NPHP3Q7Z494 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.59■■□□□ 1.21
NPHP3Q7Z494 AC009113.1-201ENST00000570267 2443 ntBASIC22.58■■□□□ 1.21
NPHP3Q7Z494 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 FTH1-202ENST00000526640 786 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 FHL2-212ENST00000607522 759 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AC093726.1-201ENST00000608064 963 ntBASIC22.58■■□□□ 1.21
NPHP3Q7Z494 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AC004461.2-201ENST00000629517 803 ntBASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 AL033527.5-202ENST00000641632 1098 ntBASIC22.58■■□□□ 1.21
NPHP3Q7Z494 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP3Q7Z494 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
NPHP3Q7Z494 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 BOLA2P3-201ENST00000404566 256 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 KRT8P12-202ENST00000472924 1397 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 SDHAP3-202ENST00000515467 728 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 AC104581.1-202ENST00000635932 2618 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 AC098850.1-201ENST00000419919 790 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 NAA38-207ENST00000576861 556 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 AC008735.3-201ENST00000596646 500 ntBASIC22.57■■□□□ 1.2
NPHP3Q7Z494 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
NPHP3Q7Z494 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AC108860.2-201ENST00000562760 2183 ntBASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC22.56■■□□□ 1.2
NPHP3Q7Z494 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP3Q7Z494 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms