Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATL3Q6DD88 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.24■□□□□ 0.67
ATL3Q6DD88 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 AL365203.3-201ENST00000609742 2057 ntBASIC19.23■□□□□ 0.67
ATL3Q6DD88 AL671710.1-201ENST00000610245 2349 ntBASIC19.23■□□□□ 0.67
ATL3Q6DD88 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 AL031731.1-201ENST00000642131 2094 ntBASIC19.23■□□□□ 0.67
ATL3Q6DD88 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATL3Q6DD88 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.23■□□□□ 0.67
ATL3Q6DD88 GGT4P-201ENST00000623672 1708 ntBASIC19.22■□□□□ 0.67
ATL3Q6DD88 AC131009.4-201ENST00000624048 1740 ntBASIC19.22■□□□□ 0.67
ATL3Q6DD88 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 MTDHP4-201ENST00000600287 670 ntBASIC19.22■□□□□ 0.67
ATL3Q6DD88 AL805961.1-202ENST00000641562 540 ntBASIC19.22■□□□□ 0.67
ATL3Q6DD88 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
ATL3Q6DD88 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATL3Q6DD88 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 PTCHD3P3-201ENST00000403073 906 ntBASIC19.21■□□□□ 0.67
ATL3Q6DD88 FGFR3P6-201ENST00000457012 610 ntBASIC19.21■□□□□ 0.67
ATL3Q6DD88 KRT18P35-201ENST00000510488 1269 ntBASIC19.21■□□□□ 0.67
ATL3Q6DD88 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 AL732292.2-201ENST00000609649 430 ntBASIC19.21■□□□□ 0.67
ATL3Q6DD88 AL121772.3-201ENST00000610840 674 ntBASIC19.21■□□□□ 0.67
ATL3Q6DD88 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms