Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 LINC00895-201ENST00000629028 1637 ntBASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 AC092068.3-201ENST00000587894 2016 ntBASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 FZD10-202ENST00000539839 3282 ntBASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 AC055876.3-201ENST00000431496 288 ntBASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 AC138649.4-201ENST00000612222 287 ntBASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 HTR7P1-202ENST00000624664 4411 ntBASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RNFT1Q5M7Z0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 MIR943-201ENST00000401286 94 ntBASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 KLF2P3-201ENST00000451977 1087 ntBASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 AC093214.1-201ENST00000511688 1107 ntBASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 ALG1L8P-201ENST00000533887 760 ntBASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RNFT1Q5M7Z0 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms