Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC144BQ3MJ40 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC144BQ3MJ40 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC144BQ3MJ40 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CCDC144BQ3MJ40 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC144BQ3MJ40 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 AC005915.1-201ENST00000624912 2018 ntBASIC19.58■□□□□ 0.72
CCDC144BQ3MJ40 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 FAM58CP-201ENST00000435741 640 ntBASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 AC023141.13-201ENST00000604991 943 ntBASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 AC027612.4-201ENST00000605371 583 ntBASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC144BQ3MJ40 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 AC007064.4-201ENST00000637740 555 ntBASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC144BQ3MJ40 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC144BQ3MJ40 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms