Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 AC008894.3-201ENST00000624324 3103 ntBASIC16.4■□□□□ 0.22
HNF4AP41235 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.4■□□□□ 0.22
HNF4AP41235 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.4■□□□□ 0.22
HNF4AP41235 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.4■□□□□ 0.22
HNF4AP41235 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.4■□□□□ 0.22
HNF4AP41235 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.4■□□□□ 0.22
HNF4AP41235 AC107918.4-202ENST00000641623 219 ntBASIC16.4■□□□□ 0.22
HNF4AP41235 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HNF4AP41235 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HNF4AP41235 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 FLJ38576-201ENST00000623820 2459 ntBASIC16.4■□□□□ 0.22
HNF4AP41235 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.4■□□□□ 0.22
HNF4AP41235 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HNF4AP41235 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HNF4AP41235 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HNF4AP41235 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.39■□□□□ 0.22
HNF4AP41235 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 RNF216P1-203ENST00000404404 2427 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 AC006504.4-201ENST00000592118 1568 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 KRT8P49-201ENST00000604166 1432 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 LAGE3P1-201ENST00000425356 484 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.39■□□□□ 0.21
HNF4AP41235 AC018712.1-201ENST00000455767 687 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
HNF4AP41235 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.39■□□□□ 0.21
HNF4AP41235 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.39■□□□□ 0.21
HNF4AP41235 AC006557.2-201ENST00000592985 1240 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 AL049840.3-201ENST00000602669 611 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 AL773604.1-201ENST00000617417 272 ntBASIC16.39■□□□□ 0.21
HNF4AP41235 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.39■□□□□ 0.21
HNF4AP41235 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
HNF4AP41235 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HNF4AP41235 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.38■□□□□ 0.21
HNF4AP41235 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HNF4AP41235 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HNF4AP41235 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.38■□□□□ 0.21
HNF4AP41235 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.38■□□□□ 0.21
HNF4AP41235 AC079776.4-201ENST00000511039 504 ntBASIC16.38■□□□□ 0.21
HNF4AP41235 AC012640.2-201ENST00000561606 901 ntBASIC16.38■□□□□ 0.21
HNF4AP41235 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms