Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX3P41225 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.92■□□□□ 0.14
SOX3P41225 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX3P41225 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
SOX3P41225 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 KRT18P58-201ENST00000527480 1120 ntBASIC15.92■□□□□ 0.14
SOX3P41225 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.92■□□□□ 0.14
SOX3P41225 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX3P41225 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
SOX3P41225 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX3P41225 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.92■□□□□ 0.14
SOX3P41225 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
SOX3P41225 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SOX3P41225 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
SOX3P41225 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX3P41225 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SOX3P41225 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SOX3P41225 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SOX3P41225 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 AC079328.2-201ENST00000561241 3354 ntBASIC15.91■□□□□ 0.14
SOX3P41225 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SOX3P41225 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 MIR940-201ENST00000401276 94 ntBASIC15.91■□□□□ 0.14
SOX3P41225 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 AC009947.1-201ENST00000444350 727 ntBASIC15.91■□□□□ 0.14
SOX3P41225 AC108751.1-201ENST00000490852 363 ntBASIC15.91■□□□□ 0.14
SOX3P41225 RPS15P9-201ENST00000494093 319 ntBASIC15.91■□□□□ 0.14
SOX3P41225 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.91■□□□□ 0.14
SOX3P41225 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SOX3P41225 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SOX3P41225 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SOX3P41225 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.91■□□□□ 0.14
SOX3P41225 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
SOX3P41225 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX3P41225 GPR89P-201ENST00000407924 1495 ntBASIC15.91■□□□□ 0.14
SOX3P41225 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms