Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HADHAP40939 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
HADHAP40939 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HADHAP40939 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HADHAP40939 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.1■□□□□ 0.33
HADHAP40939 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HADHAP40939 RNF216P1-203ENST00000404404 2427 ntBASIC17.1■□□□□ 0.33
HADHAP40939 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HADHAP40939 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HADHAP40939 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.1■□□□□ 0.33
HADHAP40939 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.1■□□□□ 0.33
HADHAP40939 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.1■□□□□ 0.33
HADHAP40939 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
HADHAP40939 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.09■□□□□ 0.33
HADHAP40939 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.09■□□□□ 0.33
HADHAP40939 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.09■□□□□ 0.33
HADHAP40939 AC018712.1-201ENST00000455767 687 ntBASIC17.09■□□□□ 0.33
HADHAP40939 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.09■□□□□ 0.33
HADHAP40939 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.09■□□□□ 0.33
HADHAP40939 AL031008.1-201ENST00000619963 541 ntBASIC17.09■□□□□ 0.33
HADHAP40939 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HADHAP40939 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HADHAP40939 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
HADHAP40939 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HADHAP40939 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HADHAP40939 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HADHAP40939 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.08■□□□□ 0.33
HADHAP40939 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HADHAP40939 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.08■□□□□ 0.33
HADHAP40939 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.08■□□□□ 0.33
HADHAP40939 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.08■□□□□ 0.33
HADHAP40939 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HADHAP40939 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HADHAP40939 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.08■□□□□ 0.32
HADHAP40939 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 AC243591.1-201ENST00000452967 1364 ntBASIC17.08■□□□□ 0.32
HADHAP40939 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.08■□□□□ 0.32
HADHAP40939 AC079781.3-201ENST00000449110 356 ntBASIC17.08■□□□□ 0.32
HADHAP40939 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HADHAP40939 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.08■□□□□ 0.32
HADHAP40939 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.08■□□□□ 0.32
HADHAP40939 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 AF228730.7-201ENST00000641842 219 ntBASIC17.08■□□□□ 0.32
HADHAP40939 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.08■□□□□ 0.32
HADHAP40939 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.08■□□□□ 0.32
HADHAP40939 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HADHAP40939 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HADHAP40939 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
HADHAP40939 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.07■□□□□ 0.32
HADHAP40939 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
HADHAP40939 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
HADHAP40939 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 AL021920.2-201ENST00000624828 1351 ntBASIC17.07■□□□□ 0.32
HADHAP40939 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HADHAP40939 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms