Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 AC139530.3-201ENST00000620344 690 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.27■□□□□ 0.68
SMARCA1P28370 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SMARCA1P28370 AC090340.1-201ENST00000620778 4980 ntBASIC19.27■□□□□ 0.68
SMARCA1P28370 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SMARCA1P28370 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMARCA1P28370 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SMARCA1P28370 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCA1P28370 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SMARCA1P28370 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCA1P28370 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.26■□□□□ 0.67
SMARCA1P28370 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.26■□□□□ 0.67
SMARCA1P28370 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 TFAMP1-201ENST00000412727 736 ntBASIC19.26■□□□□ 0.67
SMARCA1P28370 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.26■□□□□ 0.67
SMARCA1P28370 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.26■□□□□ 0.67
SMARCA1P28370 AC105339.1-204ENST00000636249 355 ntBASIC19.26■□□□□ 0.67
SMARCA1P28370 RNF216P1-203ENST00000404404 2427 ntBASIC19.26■□□□□ 0.67
SMARCA1P28370 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SMARCA1P28370 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
SMARCA1P28370 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SMARCA1P28370 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCA1P28370 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.25■□□□□ 0.67
SMARCA1P28370 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SMARCA1P28370 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.25■□□□□ 0.67
SMARCA1P28370 AC254562.1-201ENST00000417586 456 ntBASIC19.25■□□□□ 0.67
SMARCA1P28370 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 RN7SL589P-201ENST00000481268 310 ntBASIC19.25■□□□□ 0.67
SMARCA1P28370 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC19.25■□□□□ 0.67
SMARCA1P28370 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCA1P28370 AC020765.3-201ENST00000613051 740 ntBASIC19.25■□□□□ 0.67
SMARCA1P28370 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SMARCA1P28370 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SMARCA1P28370 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.25■□□□□ 0.67
SMARCA1P28370 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.25■□□□□ 0.67
SMARCA1P28370 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.25■□□□□ 0.67
SMARCA1P28370 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SMARCA1P28370 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SMARCA1P28370 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.24■□□□□ 0.67
SMARCA1P28370 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.24■□□□□ 0.67
SMARCA1P28370 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.24■□□□□ 0.67
SMARCA1P28370 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMARCA1P28370 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms