Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.74■□□□□ 0.43
BDNFP23560 ADH5P3-201ENST00000433842 1137 ntBASIC17.74■□□□□ 0.43
BDNFP23560 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.74■□□□□ 0.43
BDNFP23560 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.74■□□□□ 0.43
BDNFP23560 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BDNFP23560 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
BDNFP23560 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.74■□□□□ 0.43
BDNFP23560 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.74■□□□□ 0.43
BDNFP23560 AC105339.1-204ENST00000636249 355 ntBASIC17.74■□□□□ 0.43
BDNFP23560 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.74■□□□□ 0.43
BDNFP23560 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.74■□□□□ 0.43
BDNFP23560 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
BDNFP23560 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
BDNFP23560 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
BDNFP23560 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
BDNFP23560 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.73■□□□□ 0.43
BDNFP23560 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.73■□□□□ 0.43
BDNFP23560 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.73■□□□□ 0.43
BDNFP23560 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 AC020916.1-201ENST00000587762 1774 ntBASIC17.73■□□□□ 0.43
BDNFP23560 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
BDNFP23560 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BDNFP23560 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
BDNFP23560 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.72■□□□□ 0.43
BDNFP23560 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
BDNFP23560 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.72■□□□□ 0.43
BDNFP23560 AC092474.2-201ENST00000424288 719 ntBASIC17.72■□□□□ 0.43
BDNFP23560 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.72■□□□□ 0.43
BDNFP23560 TIMM8BP1-201ENST00000452384 211 ntBASIC17.72■□□□□ 0.43
BDNFP23560 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
BDNFP23560 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
BDNFP23560 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
BDNFP23560 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.71■□□□□ 0.43
BDNFP23560 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
BDNFP23560 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
BDNFP23560 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BDNFP23560 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms