Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.2■□□□□ 0.34
VCANP13611 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 AL512361.1-201ENST00000554200 418 ntBASIC17.2■□□□□ 0.34
VCANP13611 AL079307.3-201ENST00000556114 283 ntBASIC17.2■□□□□ 0.34
VCANP13611 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.2■□□□□ 0.34
VCANP13611 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.2■□□□□ 0.34
VCANP13611 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.2■□□□□ 0.34
VCANP13611 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCANP13611 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.2■□□□□ 0.34
VCANP13611 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.2■□□□□ 0.34
VCANP13611 AL020996.1-203ENST00000536896 2307 ntBASIC17.2■□□□□ 0.34
VCANP13611 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VCANP13611 AC138028.6-201ENST00000616106 1482 ntBASIC17.19■□□□□ 0.34
VCANP13611 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 AL353705.2-201ENST00000428243 662 ntBASIC17.19■□□□□ 0.34
VCANP13611 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.19■□□□□ 0.34
VCANP13611 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.19■□□□□ 0.34
VCANP13611 ANO7L1-203ENST00000602586 1720 ntBASIC17.19■□□□□ 0.34
VCANP13611 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
VCANP13611 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.19■□□□□ 0.34
VCANP13611 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.19■□□□□ 0.34
VCANP13611 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.19■□□□□ 0.34
VCANP13611 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VCANP13611 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
VCANP13611 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.19■□□□□ 0.34
VCANP13611 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.19■□□□□ 0.34
VCANP13611 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.19■□□□□ 0.34
VCANP13611 AC010328.2-201ENST00000597698 1111 ntBASIC17.19■□□□□ 0.34
VCANP13611 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 NOC2LP1-202ENST00000452600 2235 ntBASIC17.18■□□□□ 0.34
VCANP13611 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
VCANP13611 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.18■□□□□ 0.34
VCANP13611 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC17.18■□□□□ 0.34
VCANP13611 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VCANP13611 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 FLJ13224-201ENST00000313737 1514 ntBASIC17.18■□□□□ 0.34
VCANP13611 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
VCANP13611 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
VCANP13611 AC093503.3-201ENST00000624917 2352 ntBASIC17.18■□□□□ 0.34
VCANP13611 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.18■□□□□ 0.34
VCANP13611 RPL13AP19-201ENST00000434320 584 ntBASIC17.18■□□□□ 0.34
VCANP13611 MIR5189-201ENST00000577370 114 ntBASIC17.18■□□□□ 0.34
VCANP13611 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.18■□□□□ 0.34
VCANP13611 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VCANP13611 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC17.17■□□□□ 0.34
VCANP13611 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
VCANP13611 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.17■□□□□ 0.34
VCANP13611 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VCANP13611 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms