Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.2■□□□□ 0.18
SEMA3DO95025 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 PTCHD3P3-201ENST00000403073 906 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.2■□□□□ 0.18
SEMA3DO95025 FAAHP1-202ENST00000446499 1238 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 AC018712.1-201ENST00000455767 687 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 EMBP1-201ENST00000458200 901 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.2■□□□□ 0.18
SEMA3DO95025 RNPS1P1-201ENST00000507437 918 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SEMA3DO95025 OR7E14P-202ENST00000530490 1290 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.2■□□□□ 0.18
SEMA3DO95025 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.2■□□□□ 0.18
SEMA3DO95025 TP73-AS1-207ENST00000624167 988 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SEMA3DO95025 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SEMA3DO95025 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SEMA3DO95025 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 AC006504.4-201ENST00000592118 1568 ntBASIC16.2■□□□□ 0.18
SEMA3DO95025 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.2■□□□□ 0.18
SEMA3DO95025 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SEMA3DO95025 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.19■□□□□ 0.18
SEMA3DO95025 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 TOP3BP1-201ENST00000420768 1380 ntBASIC16.19■□□□□ 0.18
SEMA3DO95025 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 RPS2P1-201ENST00000434010 821 ntBASIC16.19■□□□□ 0.18
SEMA3DO95025 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.19■□□□□ 0.18
SEMA3DO95025 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.19■□□□□ 0.18
SEMA3DO95025 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.19■□□□□ 0.18
SEMA3DO95025 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.19■□□□□ 0.18
SEMA3DO95025 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.19■□□□□ 0.18
SEMA3DO95025 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SEMA3DO95025 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 AC004870.1-201ENST00000315132 882 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.18■□□□□ 0.18
SEMA3DO95025 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 AL450487.1-201ENST00000426799 995 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 KRT18P67-201ENST00000432816 1264 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms