Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 AD000864.1-201ENST00000624076 2295 ntBASIC15.69■□□□□ 0.1
PRKNO60260 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
PRKNO60260 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 RPSAP43-201ENST00000402237 625 ntBASIC15.69■□□□□ 0.1
PRKNO60260 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.69■□□□□ 0.1
PRKNO60260 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 GPX1P2-201ENST00000429271 606 ntBASIC15.69■□□□□ 0.1
PRKNO60260 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.69■□□□□ 0.1
PRKNO60260 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PRKNO60260 AC112482.1-201ENST00000492080 688 ntBASIC15.69■□□□□ 0.1
PRKNO60260 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.69■□□□□ 0.1
PRKNO60260 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.69■□□□□ 0.1
PRKNO60260 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.69■□□□□ 0.1
PRKNO60260 PDPK2P-202ENST00000562415 1191 ntBASIC15.69■□□□□ 0.1
PRKNO60260 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.69■□□□□ 0.1
PRKNO60260 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PRKNO60260 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PRKNO60260 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
PRKNO60260 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.68■□□□□ 0.1
PRKNO60260 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PRKNO60260 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
PRKNO60260 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 MCCD1P2-201ENST00000423228 335 ntBASIC15.68■□□□□ 0.1
PRKNO60260 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.68■□□□□ 0.1
PRKNO60260 ALG1L5P-201ENST00000482043 771 ntBASIC15.68■□□□□ 0.1
PRKNO60260 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 AC124947.2-201ENST00000547118 1133 ntBASIC15.68■□□□□ 0.1
PRKNO60260 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.68■□□□□ 0.1
PRKNO60260 AC055717.3-201ENST00000622967 595 ntBASIC15.68■□□□□ 0.1
PRKNO60260 AC007064.4-201ENST00000637740 555 ntBASIC15.68■□□□□ 0.1
PRKNO60260 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.68■□□□□ 0.1
PRKNO60260 AC092919.2-201ENST00000623631 1645 ntBASIC15.68■□□□□ 0.1
PRKNO60260 OR6D1P-203ENST00000641209 4860 ntBASIC15.68■□□□□ 0.1
PRKNO60260 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PRKNO60260 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PRKNO60260 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.68■□□□□ 0.1
PRKNO60260 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 SLC22A20-204ENST00000530038 1673 ntBASIC15.67■□□□□ 0.1
PRKNO60260 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PRKNO60260 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PRKNO60260 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 UPF3AP3-201ENST00000420996 769 ntBASIC15.67■□□□□ 0.1
PRKNO60260 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PRKNO60260 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms