Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
CUX2O14529 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC28.37■■■□□ 2.13
CUX2O14529 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC28.37■■■□□ 2.13
CUX2O14529 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
CUX2O14529 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
CUX2O14529 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CUX2O14529 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC28.37■■■□□ 2.13
CUX2O14529 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC28.37■■■□□ 2.13
CUX2O14529 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC28.37■■■□□ 2.13
CUX2O14529 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC28.37■■■□□ 2.13
CUX2O14529 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC28.37■■■□□ 2.13
CUX2O14529 AC093503.3-201ENST00000624917 2352 ntBASIC28.37■■■□□ 2.13
CUX2O14529 LINC00304-203ENST00000565008 1864 ntBASIC28.37■■■□□ 2.13
CUX2O14529 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
CUX2O14529 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CUX2O14529 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 EGFEM1P-202ENST00000431685 1563 ntBASIC28.36■■■□□ 2.13
CUX2O14529 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC28.36■■■□□ 2.13
CUX2O14529 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC28.36■■■□□ 2.13
CUX2O14529 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 SDHAP3-202ENST00000515467 728 ntBASIC28.36■■■□□ 2.13
CUX2O14529 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
CUX2O14529 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC28.36■■■□□ 2.13
CUX2O14529 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC28.36■■■□□ 2.13
CUX2O14529 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CUX2O14529 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
CUX2O14529 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC28.35■■■□□ 2.13
CUX2O14529 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 AL162726.2-201ENST00000438986 1017 ntBASIC28.35■■■□□ 2.13
CUX2O14529 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC28.35■■■□□ 2.13
CUX2O14529 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC28.35■■■□□ 2.13
CUX2O14529 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC28.35■■■□□ 2.13
CUX2O14529 AC020765.3-201ENST00000613051 740 ntBASIC28.35■■■□□ 2.13
CUX2O14529 ABBA01031660.1-201ENST00000635219 756 ntBASIC28.35■■■□□ 2.13
CUX2O14529 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
CUX2O14529 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC28.35■■■□□ 2.13
CUX2O14529 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC28.35■■■□□ 2.13
CUX2O14529 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC28.35■■■□□ 2.13
CUX2O14529 AC138028.6-201ENST00000616106 1482 ntBASIC28.35■■■□□ 2.13
CUX2O14529 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CUX2O14529 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC28.34■■■□□ 2.13
CUX2O14529 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC28.34■■■□□ 2.13
CUX2O14529 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC28.34■■■□□ 2.13
CUX2O14529 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC28.34■■■□□ 2.13
CUX2O14529 MAX-210ENST00000555419 765 ntTSL 5 BASIC28.34■■■□□ 2.13
CUX2O14529 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC28.34■■■□□ 2.13
CUX2O14529 WT1-AS_2.1-201ENST00000613208 137 ntBASIC28.34■■■□□ 2.13
CUX2O14529 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 LINC00895-201ENST00000629028 1637 ntBASIC28.34■■■□□ 2.13
CUX2O14529 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC28.34■■■□□ 2.13
CUX2O14529 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC28.34■■■□□ 2.13
CUX2O14529 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC28.34■■■□□ 2.13
CUX2O14529 AKR7A2P1-201ENST00000460134 915 ntBASIC28.34■■■□□ 2.13
CUX2O14529 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CUX2O14529 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC28.34■■■□□ 2.13
CUX2O14529 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC28.34■■■□□ 2.13
CUX2O14529 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CUX2O14529 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC28.33■■■□□ 2.13
CUX2O14529 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CUX2O14529 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC28.33■■■□□ 2.13
CUX2O14529 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC28.33■■■□□ 2.13
CUX2O14529 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC28.33■■■□□ 2.13
CUX2O14529 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CUX2O14529 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
CUX2O14529 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
CUX2O14529 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC28.33■■■□□ 2.13
CUX2O14529 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC28.33■■■□□ 2.13
CUX2O14529 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC28.33■■■□□ 2.13
CUX2O14529 AC079316.1-201ENST00000548397 411 ntBASIC28.33■■■□□ 2.13
CUX2O14529 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC28.33■■■□□ 2.13
CUX2O14529 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC28.33■■■□□ 2.13
CUX2O14529 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
CUX2O14529 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC28.33■■■□□ 2.13
CUX2O14529 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms