Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 RPSAP43-201ENST00000402237 625 ntBASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 RHOQP3-201ENST00000437982 621 ntBASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 MTDHP5-201ENST00000598980 586 ntBASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 AL513190.1-201ENST00000621254 727 ntBASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A3BPQ9Y5P4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 CXCL1P1-201ENST00000502804 216 ntBASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL4A3BPQ9Y5P4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 BCAR1-209ENST00000546196 1340 ntBASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 MCCD1P2-201ENST00000423228 335 ntBASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 MIR3687-2-201ENST00000577708 61 ntBASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 MIR3687-1-201ENST00000614492 61 ntBASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 AC004877.2-201ENST00000623941 599 ntBASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.86■□□□□ 0.61
COL4A3BPQ9Y5P4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms