Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 PI4KAP1-204ENST00000612579 1703 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 LAGE3P1-201ENST00000425356 484 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 HLA-J-202ENST00000469281 1241 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AC006557.2-201ENST00000592985 1240 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AC012313.10-201ENST00000623509 926 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AL139011.1-202ENST00000642063 584 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 AC006538.1-201ENST00000567905 1585 ntBASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS29Q9UBQ0 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 TNRC18P3-201ENST00000441896 2691 ntBASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 KRT18P56-201ENST00000507275 550 ntBASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 IFNL4P1-201ENST00000607083 540 ntBASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 AC107918.4-202ENST00000641623 219 ntBASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS29Q9UBQ0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 AC006504.4-201ENST00000592118 1568 ntBASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 AC087163.2-201ENST00000457299 853 ntBASIC16.18■□□□□ 0.18
VPS29Q9UBQ0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms