Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MKS1Q9NXB0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AC092384.3-202ENST00000564646 2873 ntBASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AC079776.2-201ENST00000641154 1609 ntBASIC16.68■□□□□ 0.26
MKS1Q9NXB0 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 BX276092.5-203ENST00000456199 560 ntBASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AC096582.2-201ENST00000510860 516 ntBASIC16.68■□□□□ 0.26
MKS1Q9NXB0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 Z69720.1-201ENST00000601483 472 ntBASIC16.68■□□□□ 0.26
MKS1Q9NXB0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 AL671710.1-201ENST00000610245 2349 ntBASIC16.68■□□□□ 0.26
MKS1Q9NXB0 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MKS1Q9NXB0 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 AC016734.2-201ENST00000624325 1377 ntBASIC16.67■□□□□ 0.26
MKS1Q9NXB0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 AL031731.1-201ENST00000642131 2094 ntBASIC16.67■□□□□ 0.26
MKS1Q9NXB0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 DRAXINP1-201ENST00000437611 948 ntBASIC16.67■□□□□ 0.26
MKS1Q9NXB0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 MIR4492-201ENST00000581627 80 ntBASIC16.67■□□□□ 0.26
MKS1Q9NXB0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 AC010331.1-201ENST00000611423 582 ntBASIC16.67■□□□□ 0.26
MKS1Q9NXB0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MKS1Q9NXB0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 PAUPAR-201ENST00000630360 2965 ntBASIC16.66■□□□□ 0.26
MKS1Q9NXB0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MKS1Q9NXB0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms