Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 FAM86GP-201ENST00000448322 971 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SPDYE11-202ENST00000450699 704 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SPDYE9P-201ENST00000570642 692 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SPDYE10P-202ENST00000612005 668 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SPDYE8P-202ENST00000612377 668 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 AC009093.7-201ENST00000623853 1223 ntBASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PKD1P1-201ENST00000458669 6805 ntBASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 AC005237.2-201ENST00000434368 219 ntBASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF3Q9HD45 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 MIR4515-201ENST00000584082 81 ntBASIC16.86■□□□□ 0.29
TM9SF3Q9HD45 AC005498.2-205ENST00000593218 784 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms