Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SYNGAP1Q96PV0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 TOP3BP1-201ENST00000420768 1380 ntBASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 RNU1-129P-201ENST00000384064 167 ntBASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 AC190387.1-201ENST00000551683 408 ntBASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 U1.21-201ENST00000580816 167 ntBASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 AC116353.5-201ENST00000638148 1699 ntBASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SYNGAP1Q96PV0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 FZD10-202ENST00000539839 3282 ntBASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AC093525.9-201ENST00000624961 1746 ntBASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AL031055.1-201ENST00000606362 631 ntBASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AC008267.7-201ENST00000624570 1194 ntBASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 AC008677.1-201ENST00000519230 1561 ntBASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
SYNGAP1Q96PV0 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 SLC22A20-204ENST00000530038 1673 ntBASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 HLA-V-201ENST00000429037 534 ntBASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.1■□□□□ 0.65
SYNGAP1Q96PV0 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms