Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 AL645728.2-201ENST00000641974 660 ntBASIC17.39■□□□□ 0.37
RPRD1AQ96P16 PCDHB17P-201ENST00000539533 2393 ntBASIC17.39■□□□□ 0.37
RPRD1AQ96P16 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RPRD1AQ96P16 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 AC131009.4-201ENST00000624048 1740 ntBASIC17.38■□□□□ 0.37
RPRD1AQ96P16 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 HCG4-201ENST00000418983 998 ntBASIC17.38■□□□□ 0.37
RPRD1AQ96P16 MCCD1P2-201ENST00000423228 335 ntBASIC17.38■□□□□ 0.37
RPRD1AQ96P16 DNAJB3-201ENST00000446806 729 ntBASIC17.38■□□□□ 0.37
RPRD1AQ96P16 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 AL031432.2-201ENST00000566714 459 ntBASIC17.38■□□□□ 0.37
RPRD1AQ96P16 AL928711.1-201ENST00000570165 459 ntBASIC17.38■□□□□ 0.37
RPRD1AQ96P16 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RPRD1AQ96P16 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AC087641.1-201ENST00000557561 1021 ntBASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AC010327.4-202ENST00000591484 748 ntBASIC17.37■□□□□ 0.37
RPRD1AQ96P16 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AP001350.2-201ENST00000625104 1094 ntBASIC17.37■□□□□ 0.37
RPRD1AQ96P16 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RPRD1AQ96P16 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 MIR3687-2-201ENST00000577708 61 ntBASIC17.36■□□□□ 0.37
RPRD1AQ96P16 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.36■□□□□ 0.37
RPRD1AQ96P16 AC068137.2-201ENST00000605408 478 ntBASIC17.36■□□□□ 0.37
RPRD1AQ96P16 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.36■□□□□ 0.37
RPRD1AQ96P16 MIR3687-1-201ENST00000614492 61 ntBASIC17.36■□□□□ 0.37
RPRD1AQ96P16 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms