Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
RTF1Q92541 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.96■■□□□ 1.11
RTF1Q92541 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.96■■□□□ 1.11
RTF1Q92541 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
RTF1Q92541 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.96■■□□□ 1.11
RTF1Q92541 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.96■■□□□ 1.11
RTF1Q92541 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC21.96■■□□□ 1.11
RTF1Q92541 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
RTF1Q92541 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.96■■□□□ 1.11
RTF1Q92541 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RTF1Q92541 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
RTF1Q92541 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
RTF1Q92541 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
RTF1Q92541 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
RTF1Q92541 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.11
RTF1Q92541 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.95■■□□□ 1.11
RTF1Q92541 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
RTF1Q92541 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.95■■□□□ 1.1
RTF1Q92541 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
RTF1Q92541 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.95■■□□□ 1.1
RTF1Q92541 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
RTF1Q92541 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.95■■□□□ 1.1
RTF1Q92541 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
RTF1Q92541 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
RTF1Q92541 AL139400.1-201ENST00000366220 510 ntBASIC21.95■■□□□ 1.1
RTF1Q92541 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
RTF1Q92541 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.95■■□□□ 1.1
RTF1Q92541 AL627223.1-201ENST00000416693 442 ntBASIC21.95■■□□□ 1.1
RTF1Q92541 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC21.95■■□□□ 1.1
RTF1Q92541 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.95■■□□□ 1.1
RTF1Q92541 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.95■■□□□ 1.1
RTF1Q92541 AC004449.1-201ENST00000564240 433 ntBASIC21.95■■□□□ 1.1
RTF1Q92541 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC21.95■■□□□ 1.1
RTF1Q92541 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC21.95■■□□□ 1.1
RTF1Q92541 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
RTF1Q92541 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
RTF1Q92541 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC21.95■■□□□ 1.1
RTF1Q92541 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 WASH6P-202ENST00000359512 1437 ntBASIC21.95■■□□□ 1.1
RTF1Q92541 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
RTF1Q92541 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RTF1Q92541 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC21.94■■□□□ 1.1
RTF1Q92541 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC21.94■■□□□ 1.1
RTF1Q92541 AL645939.2-201ENST00000427340 991 ntBASIC21.94■■□□□ 1.1
RTF1Q92541 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.94■■□□□ 1.1
RTF1Q92541 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.94■■□□□ 1.1
RTF1Q92541 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.94■■□□□ 1.1
RTF1Q92541 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.94■■□□□ 1.1
RTF1Q92541 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RTF1Q92541 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.94■■□□□ 1.1
RTF1Q92541 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
RTF1Q92541 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
RTF1Q92541 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
RTF1Q92541 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms