Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 AL591684.3-201ENST00000605187 298 ntBASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATG4AQ8WYN0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 AL021920.2-201ENST00000624828 1351 ntBASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 LINC00895-201ENST00000629028 1637 ntBASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 AL590787.1-201ENST00000568856 1315 ntBASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 ATP5G2P1-201ENST00000433580 426 ntBASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4AQ8WYN0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AC132008.2-207ENST00000454517 770 ntBASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AC064862.7-201ENST00000604520 867 ntBASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AL353135.1-201ENST00000606729 504 ntBASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AC010331.1-201ENST00000611423 582 ntBASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 AP005117.1-201ENST00000584346 1413 ntBASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4AQ8WYN0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms