Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 AP002383.4-201ENST00000442518 975 ntBASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 ABCD1P5-201ENST00000445663 754 ntBASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 NUS1P1-201ENST00000446295 882 ntBASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 LINC00265-3P-201ENST00000447588 903 ntBASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 AC010331.1-201ENST00000611423 582 ntBASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 AP002414.1-201ENST00000391405 1147 ntBASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 PRYP5-201ENST00000451909 266 ntBASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 AC074051.2-201ENST00000565115 352 ntBASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 AP000550.4-202ENST00000639755 178 ntBASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC54Q8NEL0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 LINC00895-201ENST00000629028 1637 ntBASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 AC079776.2-201ENST00000641154 1609 ntBASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC54Q8NEL0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 AC087388.1-201ENST00000571370 1112 ntBASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 AL139011.1-202ENST00000642063 584 ntBASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms