Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC60Q8IWA6 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 SNX33P1-201ENST00000592116 1762 ntBASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 AC009093.7-201ENST00000623853 1223 ntBASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC60Q8IWA6 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 FAM58DP-201ENST00000428076 619 ntBASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 AC109322.1-201ENST00000524499 1264 ntBASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 RFPL4AP1-201ENST00000530883 850 ntBASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 LINC01225-203ENST00000563550 1244 ntBASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC60Q8IWA6 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 AL645728.1-201ENST00000366221 2101 ntBASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 AC005237.2-201ENST00000434368 219 ntBASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 HLA-J-203ENST00000494367 1087 ntBASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC60Q8IWA6 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms