Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SDHAP2-201ENST00000455183 2001 ntBASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 AC013726.1-201ENST00000563747 2285 ntBASIC10.51□□□□□ -0.73
LINC00643Q86TS7 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 COL6A4P2-202ENST00000504443 2753 ntBASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
LINC00643Q86TS7 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 MCRIP2P1-201ENST00000394346 511 ntBASIC10.5□□□□□ -0.73
LINC00643Q86TS7 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 AK3-203ENST00000447596 705 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 DUX4L19-201ENST00000557448 1267 ntBASIC10.5□□□□□ -0.73
LINC00643Q86TS7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 AL031848.2-201ENST00000607670 837 ntBASIC10.5□□□□□ -0.73
LINC00643Q86TS7 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
LINC00643Q86TS7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC10.49□□□□□ -0.73
LINC00643Q86TS7 AC009102.3-201ENST00000623118 1491 ntBASIC10.49□□□□□ -0.73
LINC00643Q86TS7 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms