Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PCDH1Q08174 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.31■□□□□ 0.2
PCDH1Q08174 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 KRT18P67-201ENST00000432816 1264 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 RPS2P1-201ENST00000434010 821 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 HNRNPDP1-201ENST00000439535 754 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 SLC25A6P2-201ENST00000497974 877 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 IGHV3-65-201ENST00000523210 341 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.31■□□□□ 0.2
PCDH1Q08174 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PCDH1Q08174 PGM5P2-202ENST00000637225 1043 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PCDH1Q08174 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH1Q08174 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.31■□□□□ 0.2
PCDH1Q08174 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.31■□□□□ 0.2
PCDH1Q08174 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 HLA-A-202ENST00000376806 1854 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCDH1Q08174 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PCDH1Q08174 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PCDH1Q08174 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.31■□□□□ 0.2
PCDH1Q08174 PI4KAP1-204ENST00000612579 1703 ntBASIC16.31■□□□□ 0.2
PCDH1Q08174 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 AL603756.1-201ENST00000606511 2163 ntBASIC16.3■□□□□ 0.2
PCDH1Q08174 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 FAM197Y8-203ENST00000450145 560 ntBASIC16.3■□□□□ 0.2
PCDH1Q08174 MPDU1-223ENST00000582151 728 ntBASIC16.3■□□□□ 0.2
PCDH1Q08174 AC104692.2-201ENST00000603054 253 ntBASIC16.3■□□□□ 0.2
PCDH1Q08174 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDH1Q08174 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCDH1Q08174 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PCDH1Q08174 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.3■□□□□ 0.2
PCDH1Q08174 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.29■□□□□ 0.2
PCDH1Q08174 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 AC129492.6-201ENST00000611383 1305 ntBASIC16.29■□□□□ 0.2
PCDH1Q08174 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
PCDH1Q08174 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH1Q08174 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH1Q08174 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.29■□□□□ 0.2
PCDH1Q08174 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PCDH1Q08174 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.29■□□□□ 0.2
PCDH1Q08174 AC107918.2-201ENST00000530817 355 ntBASIC16.29■□□□□ 0.2
PCDH1Q08174 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH1Q08174 AC105339.3-201ENST00000560043 636 ntBASIC16.29■□□□□ 0.2
PCDH1Q08174 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH1Q08174 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH1Q08174 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PCDH1Q08174 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.29■□□□□ 0.2
PCDH1Q08174 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.29■□□□□ 0.2
PCDH1Q08174 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCDH1Q08174 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PCDH1Q08174 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PCDH1Q08174 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH1Q08174 SNX33P1-201ENST00000592116 1762 ntBASIC16.28■□□□□ 0.2
PCDH1Q08174 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.28■□□□□ 0.2
PCDH1Q08174 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH1Q08174 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCDH1Q08174 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms