Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 NCF1C-201ENST00000438382 1427 ntBASIC13.66□□□□□ -0.22
CX3CL1P78423 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CX3CL1P78423 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.66□□□□□ -0.22
CX3CL1P78423 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CX3CL1P78423 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CL1P78423 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CL1P78423 RNF151-202ENST00000569210 853 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.66□□□□□ -0.22
CX3CL1P78423 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 AL121912.1-201ENST00000603683 238 ntBASIC13.66□□□□□ -0.22
CX3CL1P78423 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CL1P78423 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.66□□□□□ -0.22
CX3CL1P78423 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.66□□□□□ -0.22
CX3CL1P78423 GPR89P-201ENST00000407924 1495 ntBASIC13.66□□□□□ -0.22
CX3CL1P78423 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 FLJ38576-201ENST00000623820 2459 ntBASIC13.66□□□□□ -0.22
CX3CL1P78423 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CX3CL1P78423 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CL1P78423 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CX3CL1P78423 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CX3CL1P78423 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CX3CL1P78423 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CX3CL1P78423 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC13.65□□□□□ -0.22
CX3CL1P78423 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CL1P78423 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 FAAHP1-202ENST00000446499 1238 ntBASIC13.65□□□□□ -0.22
CX3CL1P78423 AC073648.2-201ENST00000510116 352 ntBASIC13.65□□□□□ -0.22
CX3CL1P78423 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.65□□□□□ -0.22
CX3CL1P78423 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 AC021087.4-201ENST00000563761 564 ntBASIC13.65□□□□□ -0.22
CX3CL1P78423 AC139887.3-201ENST00000568585 713 ntBASIC13.65□□□□□ -0.22
CX3CL1P78423 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CX3CL1P78423 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
CX3CL1P78423 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CX3CL1P78423 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.65□□□□□ -0.22
CX3CL1P78423 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CX3CL1P78423 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
CX3CL1P78423 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms