Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 SPDYE21P-201ENST00000413323 827 ntBASIC16.63■□□□□ 0.25
PKNOX1P55347 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.63■□□□□ 0.25
PKNOX1P55347 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.63■□□□□ 0.25
PKNOX1P55347 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PKNOX1P55347 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PKNOX1P55347 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.62■□□□□ 0.25
PKNOX1P55347 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.62■□□□□ 0.25
PKNOX1P55347 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
PKNOX1P55347 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PKNOX1P55347 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.62■□□□□ 0.25
PKNOX1P55347 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.62■□□□□ 0.25
PKNOX1P55347 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.62■□□□□ 0.25
PKNOX1P55347 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.62■□□□□ 0.25
PKNOX1P55347 NUS1P1-201ENST00000446295 882 ntBASIC16.62■□□□□ 0.25
PKNOX1P55347 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.62■□□□□ 0.25
PKNOX1P55347 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.62■□□□□ 0.25
PKNOX1P55347 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.62■□□□□ 0.25
PKNOX1P55347 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.62■□□□□ 0.25
PKNOX1P55347 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 AC092329.2-201ENST00000598402 547 ntBASIC16.62■□□□□ 0.25
PKNOX1P55347 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.62■□□□□ 0.25
PKNOX1P55347 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.62■□□□□ 0.25
PKNOX1P55347 AL590326.2-201ENST00000625139 305 ntBASIC16.62■□□□□ 0.25
PKNOX1P55347 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
PKNOX1P55347 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.62■□□□□ 0.25
PKNOX1P55347 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 SIGLEC16-201ENST00000599858 1437 ntBASIC16.62■□□□□ 0.25
PKNOX1P55347 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PKNOX1P55347 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.61■□□□□ 0.25
PKNOX1P55347 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.61■□□□□ 0.25
PKNOX1P55347 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.61■□□□□ 0.25
PKNOX1P55347 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 AC148477.5-201ENST00000625164 1645 ntBASIC16.61■□□□□ 0.25
PKNOX1P55347 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PKNOX1P55347 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.61■□□□□ 0.25
PKNOX1P55347 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.61■□□□□ 0.25
PKNOX1P55347 AC104819.1-201ENST00000504587 486 ntBASIC16.61■□□□□ 0.25
PKNOX1P55347 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.61■□□□□ 0.25
PKNOX1P55347 AC074051.2-201ENST00000565115 352 ntBASIC16.61■□□□□ 0.25
PKNOX1P55347 AC087388.1-201ENST00000571370 1112 ntBASIC16.61■□□□□ 0.25
PKNOX1P55347 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.61■□□□□ 0.25
PKNOX1P55347 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.61■□□□□ 0.25
PKNOX1P55347 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.61■□□□□ 0.25
PKNOX1P55347 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.61■□□□□ 0.25
PKNOX1P55347 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms