Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.49■□□□□ 0.55
CLCN3P51790 LINC01225-203ENST00000563550 1244 ntBASIC18.49■□□□□ 0.55
CLCN3P51790 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.49■□□□□ 0.55
CLCN3P51790 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 PCDHB17P-201ENST00000539533 2393 ntBASIC18.49■□□□□ 0.55
CLCN3P51790 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCN3P51790 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CLCN3P51790 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CLCN3P51790 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CLCN3P51790 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CLCN3P51790 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 IGHV3-62-201ENST00000520057 340 ntBASIC18.48■□□□□ 0.55
CLCN3P51790 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.48■□□□□ 0.55
CLCN3P51790 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCN3P51790 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CLCN3P51790 UXT-AS1-201ENST00000590504 1525 ntBASIC18.48■□□□□ 0.55
CLCN3P51790 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCN3P51790 AL671710.1-201ENST00000610245 2349 ntBASIC18.48■□□□□ 0.55
CLCN3P51790 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CLCN3P51790 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.47■□□□□ 0.55
CLCN3P51790 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.47■□□□□ 0.55
CLCN3P51790 GPS2P2-201ENST00000430745 888 ntBASIC18.47■□□□□ 0.55
CLCN3P51790 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.47■□□□□ 0.55
CLCN3P51790 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 AC025678.2-201ENST00000562061 970 ntBASIC18.47■□□□□ 0.55
CLCN3P51790 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.47■□□□□ 0.55
CLCN3P51790 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.47■□□□□ 0.55
CLCN3P51790 AC093512.1-201ENST00000617969 520 ntBASIC18.47■□□□□ 0.55
CLCN3P51790 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.47■□□□□ 0.55
CLCN3P51790 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.47■□□□□ 0.55
CLCN3P51790 LINC00895-201ENST00000629028 1637 ntBASIC18.47■□□□□ 0.55
CLCN3P51790 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CLCN3P51790 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CLCN3P51790 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 AC060834.1-201ENST00000443027 2032 ntBASIC18.47■□□□□ 0.55
CLCN3P51790 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.47■□□□□ 0.55
CLCN3P51790 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.47■□□□□ 0.55
CLCN3P51790 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLCN3P51790 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCN3P51790 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.46■□□□□ 0.55
CLCN3P51790 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCN3P51790 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.46■□□□□ 0.55
CLCN3P51790 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCN3P51790 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCN3P51790 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCN3P51790 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCN3P51790 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCN3P51790 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLCN3P51790 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.46■□□□□ 0.55
CLCN3P51790 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.46■□□□□ 0.55
CLCN3P51790 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.46■□□□□ 0.55
CLCN3P51790 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.46■□□□□ 0.55
CLCN3P51790 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms